How a bioinformatics scientist can use AI, task by task

I work as a bioinformatics scientist. Part of my job is to consult with researchers to analyze problems, recommend technology-based solutions, or determine computational strategies.

Context: We use Microsoft Visual Basic for Applications VBA and C; the work draws on biology, engineering and technology and chemistry.
Problem: [research question]
Data and tools: [formats, libraries]

Propose an approach and write code with tests and documentation. Propose the approach first, then the code with comments and tests, and point out security risks.

I work as a bioinformatics scientist. Part of my job is to compile data for use in activities, such as gene expression profiling, genome annotation, or structural bioinformatics.

Context: We use The MathWorks MATLAB and SAS; the work draws on biology, engineering and technology and chemistry.
Question: [trait, gene, expression]
Organism and data: [species, samples, sequencing]

Outline the experimental design, analysis methods, controls, and key literature. Give sources I can check and say clearly when you're unsure.

I work as a bioinformatics scientist. Part of my job is to design and apply bioinformatics algorithms including unsupervised and supervised machine learning, dynamic programming, or graphic algorithms.

Context: We use Microsoft Visual Basic for Applications VBA and C; the work draws on biology, engineering and technology and chemistry.
Problem: [research question]
Data and tools: [formats, libraries]

Propose an approach and write code with tests and documentation. Propose the approach first, then the code with comments and tests, and point out security risks.

I work as a bioinformatics scientist. Part of my job is to test new and updated bioinformatics tools and software.

Context: We use Microsoft Visual Basic for Applications VBA and C; the work draws on biology, engineering and technology and chemistry.
Problem: [research question]
Data and tools: [formats, libraries]

Propose an approach and write code with tests and documentation. Propose the approach first, then the code with comments and tests, and point out security risks.

I work as a bioinformatics scientist. Part of my job is to create novel computational approaches and analytical tools as required by research goals.

Context: We use Microsoft Visual Basic for Applications VBA and C; the work draws on biology, engineering and technology and chemistry.
Problem: [research question]
Data and tools: [formats, libraries]

Propose an approach and write code with tests and documentation. Propose the approach first, then the code with comments and tests, and point out security risks.

I work as a bioinformatics scientist. Part of my job is to communicate research results through conference presentations, scientific publications, or project reports.

Context: We use The MathWorks MATLAB and SAS; the work draws on biology, engineering and technology and chemistry.
Topic: [status, results, fixes]
Audience: [customers, staff]
Notes: [paste]

Draft slides outline and speaker notes. Use plain language, one everyday analogy, and the questions people are most likely to ask with short answers.

I work as a bioinformatics scientist. Part of my job is to manipulate publicly accessible, commercial, or proprietary genomic, proteomic, or post-genomic databases.

Context: We use C and Microsoft Visual Studio; the work draws on biology, engineering and technology and chemistry.
Data: [experiments, models, observations]
Uses: [queries, analysis, sharing]

Design a schema with tables, keys and metadata, and write creation scripts and example queries. Propose the approach first, then the code with comments and tests, and point out security risks.

I work as a bioinformatics scientist. Part of my job is to develop data models and databases.

Context: We use C and Microsoft Visual Studio; the work draws on biology, engineering and technology and chemistry.
Data: [experiments, models, observations]
Uses: [queries, analysis, sharing]

Design a schema with tables, keys and metadata, and write creation scripts and example queries. Propose the approach first, then the code with comments and tests, and point out security risks.

I work as a bioinformatics scientist. Part of my job is to instruct others in the selection and use of bioinformatics tools.

Context: We use Microsoft PowerPoint and The MathWorks MATLAB; the work draws on biology, engineering and technology and chemistry.
Procedure or tool: [describe]
Trainees: [describe]

Plan training with hands-on exercises. Include timings, a realistic practice scenario from my work, and a short check for understanding with answers.

I work as a bioinformatics scientist. Part of my job is to recommend new systems and processes to improve operations.

Context: The work draws on biology, engineering and technology and chemistry.
Issue: [market, operations, policy]
Audience: [groups, dealers]

Write advice with reasons. Use plain language, one everyday analogy, and the questions people are most likely to ask with short answers.

I work as a bioinformatics scientist. Part of my job is to collaborate with software developers in the development and modification of commercial bioinformatics software.

Context: We use C and Microsoft Visual Studio; the work draws on biology, engineering and technology and chemistry.
Problem: [research question]
Data and tools: [formats, libraries]

Propose an approach and write code with tests and documentation. Propose the approach first, then the code with comments and tests, and point out security risks.

I work as a bioinformatics scientist. Part of my job is to improve user interfaces to bioinformatics software and databases.

Context: We use Microsoft Visual Basic for Applications VBA and C; the work draws on biology, engineering and technology and chemistry.
Problem: [research question]
Data and tools: [formats, libraries]

Propose an approach and write code with tests and documentation. Propose the approach first, then the code with comments and tests, and point out security risks.

I work as a bioinformatics scientist. Part of my job is to confer with departments, such as marketing, business development, or operations, to coordinate product development or improvement.

Context: We use Python and R.
Issue: [product, construction]
Specialists: [engineers, experts]

Draft questions and data to share. Keep it under 150 words with a clear ask, plus a 2-sentence version for chat.

I work as a bioinformatics scientist. Part of my job is to create or modify web-based bioinformatics tools.

Context: We use Microsoft Visual Basic for Applications VBA and C; the work draws on biology, engineering and technology and chemistry.
Problem: [research question]
Data and tools: [formats, libraries]

Propose an approach and write code with tests and documentation. Propose the approach first, then the code with comments and tests, and point out security risks.